PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016651748.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 453aa    MW: 49545.9 Da    PI: 8.4173
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016651748.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.63.2e-115277227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    +++ C+++ rtG C++G++C+F+H+p
  XP_016651748.1 52 GEPDCSYYIRTGLCRFGATCRFNHPP 77
                    5799********************97 PP

2zf-CCCH38.81.6e-1298122327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+++++tGtCk+G++CkF+H++
  XP_016651748.1  98 QPECQYYLKTGTCKFGATCKFHHPR 122
                     799********************96 PP

3zf-CCCH34.24.2e-11157179527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     +C +++rtG+Ck+G++Ck++H++
  XP_016651748.1 157 ECAYYLRTGQCKFGSTCKYHHPQ 179
                     7********************97 PP

4zf-CCCH37.83.1e-12314340127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+f+++tG Ck+G+ C+F+H++
  XP_016651748.1 314 PGQPECQFYMKTGDCKFGAVCRFHHPR 340
                     5789*********************96 PP

5zf-CCCH40.16.1e-13360386127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++lC f++r+G+Ck+G++CkF H++
  XP_016651748.1 360 PGEPLCIFYSRYGICKFGPSCKFDHPM 386
                     589**********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2675078IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-55077IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-85277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-55578IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-45676IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.15995123IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-695122IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-1098122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-699124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-5101122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.324152180IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-4154179IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6155180IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-9157179IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-4158178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596313341IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6313340IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-9315340IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-5317343IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-5319341IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709359387IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7359386IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-10361386IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5362386IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-4364384IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MDFDAGIPMS RAAAPVTDAP SLSPSLTQDA MWQMNLRSSE TLEPGSYPER TGEPDCSYYI  60
RTGLCRFGAT CRFNHPPNRK LAIATARMKG EFPERIGQPE CQYYLKTGTC KFGATCKFHH  120
PRDKAGIAGR VALNILGYPL RPVRFSVFLS LIQNEIECAY YLRTGQCKFG STCKYHHPQP  180
TNMMVSLRGS PVYPTVQSPT TPGQQSYAGG ITNWSRASFI PSPRWQAPSS YAPLIVPQGV  240
VSVPGWSAYS GQIGSVSSPE SQQQPVGNSQ IYGTSRQGEP ENSGSQGTFS PYRSGSIPVG  300
FYALQRENVF PERPGQPECQ FYMKTGDCKF GAVCRFHHPR ERLIPTPDCV LSPIGLPLRP  360
GEPLCIFYSR YGICKFGPSC KFDHPMGIFT YNPNASSSAD APARRLLGST SATTSLNLSS  420
EGLVEAGSAN PRRLSLSEPR QIPSGDDNID TED
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008218439.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLM5VZ660.0M5VZ66_PRUPE; Uncharacterized protein
STRINGVIT_04s0023g00370.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1